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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RAllelicimbalance(RPackage):
"""Provides a framework for allelic specific expression
investigation using RNA-seq data."""
homepage = "http://bioconductor.org/packages/AllelicImbalance/"
git = "https://git.bioconductor.org/packages/AllelicImbalance.git"
version('1.14.0', commit='35958534945819baafde0e13d1eb4d05a514142c')
depends_on('r@3.4.0:3.4.9', when='@1.14.0')
depends_on('r-genomicranges', type=('build', 'run'))
depends_on('r-summarizedexperiment', type=('build', 'run'))
depends_on('r-genomicalignments', type=('build', 'run'))
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-bsgenome', type=('build', 'run'))
depends_on('r-variantannotation', type=('build', 'run'))
depends_on('r-biostrings', type=('build', 'run'))
depends_on('r-s4vectors', type=('build', 'run'))
depends_on('r-iranges', type=('build', 'run'))
depends_on('r-rsamtools', type=('build', 'run'))
depends_on('r-genomicfeatures', type=('build', 'run'))
depends_on('r-gviz', type=('build', 'run'))
depends_on('r-lattice', type=('build', 'run'))
depends_on('r-latticeextra', type=('build', 'run'))
depends_on('r-gridextra', type=('build', 'run'))
depends_on('r-seqinr', type=('build', 'run'))
depends_on('r-genomeinfodb', type=('build', 'run'))
depends_on('r-nlme', type=('build', 'run'))
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