1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RAlpine(RPackage):
"""alpine.
Fragment sequence bias modeling and correction for RNA-seq transcript
abundance estimation."""
bioc = "alpine"
version('1.20.0', commit='9348ef14128aa6be10cca1987736ddbc385df7e9')
version('1.16.0', commit='aee397774ac6cd17ad45dc05be14c526647f3c13')
version('1.10.0', commit='bf22597eb2c6c6aaa26900ed4ece96ce7256e77c')
version('1.8.0', commit='ddaa0b4517f0909460aa1bd33c8e43dc6c8d23d4')
version('1.6.0', commit='ea55fcb3cedb5caa20d8264bb29a4975041f5274')
version('1.4.0', commit='c85beb208fd6bfc0a61a483a98498b589640f946')
version('1.2.0', commit='896872e6071769e1ac2cf786974edb8b875c45eb')
depends_on('r@3.3:', type=('build', 'run'))
depends_on('r-biostrings', type=('build', 'run'))
depends_on('r-iranges', type=('build', 'run'))
depends_on('r-genomicranges', type=('build', 'run'))
depends_on('r-genomicalignments', type=('build', 'run'))
depends_on('r-rsamtools', type=('build', 'run'))
depends_on('r-summarizedexperiment', type=('build', 'run'))
depends_on('r-genomicfeatures', type=('build', 'run'))
depends_on('r-speedglm', type=('build', 'run'))
depends_on('r-graph', type=('build', 'run'))
depends_on('r-rbgl', type=('build', 'run'))
depends_on('r-stringr', type=('build', 'run'))
depends_on('r-genomeinfodb', type=('build', 'run'))
depends_on('r-s4vectors', type=('build', 'run'))
|
