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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RAlsace(RPackage):
    """ALS for the Automatic Chemical Exploration of mixtures.

       Alternating Least Squares (or Multivariate Curve Resolution) for
       analytical chemical data, in particular hyphenated data where the first
       direction is a retention time axis, and the second a spectral axis.
       Package builds on the basic als function from the ALS package and adds
       functionality for high-throughput analysis, including definition of time
       windows, clustering of profiles, retention time correction, etcetera."""

    homepage = "https://bioconductor.org/packages/alsace"
    git      = "https://git.bioconductor.org/packages/alsace.git"

    version('1.20.0', commit='47f1cf8daafc864e5e3418009f349ce85d6b0389')
    version('1.18.0', commit='c9fc43c7b441de43b14ef1be69926c4c4a566191')
    version('1.16.0', commit='5a51a19aeccbba0123222201cb7a228559f29653')
    version('1.14.0', commit='aebb13b00eb850f9569391c4c92183b55b70ae89')
    version('1.12.0', commit='1364c65bbff05786d05c02799fd44fd57748fae3')

    depends_on('r@2.10:', type=('build', 'run'))
    depends_on('r-als', type=('build', 'run'))
    depends_on('r-ptw@1.0.6:', type=('build', 'run'))