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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RAnaquin(RPackage):
"""Statistical analysis of sequins.
The project is intended to support the use of sequins (synthetic
sequencing spike-in controls) owned and made available by the Garvan
Institute of Medical Research. The goal is to provide a standard open
source library for quantitative analysis, modelling and visualization of
spike-in controls."""
bioc = "Anaquin"
version('2.18.0', commit='c8e3df3e299c32daac0dda23cea59a18673d886b')
version('2.14.0', commit='d0a34c931a0e72080bff91dacb37dbbe26b45386')
version('2.8.0', commit='f591d420740b77881ae0a4c16b208c63d460c601')
version('2.6.1', commit='22b6c71697fe1e2db8f6d18f77728d0fd96fa6d6')
version('2.4.0', commit='0d6ae80ff622151a782e4774ca274f06024a71d2')
version('2.2.0', commit='739f4ed2b73c43f934fd65a993ecb48242a5d5da')
version('1.2.0', commit='584d1970cc9dc1d354f9a6d7c1306bd7e8567119')
depends_on('r@3.3:', type=('build', 'run'))
depends_on('r-ggplot2@2.2.0:', type=('build', 'run'))
depends_on('r-rocr', type=('build', 'run'))
depends_on('r-knitr', type=('build', 'run'))
depends_on('r-qvalue', type=('build', 'run'))
depends_on('r-locfit', type=('build', 'run'))
depends_on('r-plyr', type=('build', 'run'))
depends_on('r-deseq2', type=('build', 'run'))
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