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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class RAnnotate(RPackage):
    """Annotation for microarrays.

       Using R enviroments for annotation."""

    bioc = "annotate"

    version('1.72.0', commit='67ac76a9ff6d60dc1620763d3aa98aef39443110')
    version('1.68.0', commit='98cdb12c612b3f3fc06329a89a1ffb0a92b555c0')
    version('1.62.0', commit='19af0b39747ea83fe8fe9b8bbb6036363bc815cd')
    version('1.60.1', commit='9d8f87db02bf0c1593e79da754335a24d3a8ed16')
    version('1.58.0', commit='d1b5dd5feb8793f4f816d9a4aecbebb5ec7df7bc')
    version('1.56.2', commit='95ec3b004f5356bd78b2a60cbf7f93e0d48cf346')
    version('1.54.0', commit='860cc5b696795a31b18beaf4869f9c418d74549e')

    depends_on('r@2.10:', type=('build', 'run'))
    depends_on('r-annotationdbi@1.27.5:', type=('build', 'run'))
    depends_on('r-xml', type=('build', 'run'))
    depends_on('r-biobase', type=('build', 'run'))
    depends_on('r-dbi', type=('build', 'run'))
    depends_on('r-xtable', type=('build', 'run'))
    depends_on('r-biocgenerics@0.13.8:', type=('build', 'run'))
    depends_on('r-httr', type=('build', 'run'), when='@1.68.0:')

    depends_on('r-rcurl', type=('build', 'run'), when='@:1.62.0')