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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RAnnotationhub(RPackage):
"""Client to access AnnotationHub resources.
This package provides a client for the Bioconductor AnnotationHub web
resource. The AnnotationHub web resource provides a central location
where genomic files (e.g., VCF, bed, wig) and other resources from
standard locations (e.g., UCSC, Ensembl) can be discovered. The resource
includes metadata about each resource, e.g., a textual description,
tags, and date of modification. The client creates and manages a local
cache of files retrieved by the user, helping with quick and
reproducible access."""
bioc = "AnnotationHub"
version('3.2.1', commit='ad1dfe86f0b0ea4711cc9cdb89e073e8794ec9aa')
version('2.22.0', commit='3ab7dceebbc31ac14ca931f66c662cf9538b7d0a')
version('2.16.1', commit='f8cefaae603b782e1c1ad277a3fb89d44e3aa1ed')
version('2.14.5', commit='993a98ce3de04a0bbddcbde5b1ab2a9550275a12')
version('2.12.1', commit='471407bd9cdc612e01deb071c91bd9e5f1ea5e55')
version('2.10.1', commit='b7cb668de9b9625ac2beb3dcde1fa39e289eec29')
version('2.8.3', commit='8aa9c64262a8d708d2bf1c82f82dfc3d7d4ccc0c')
depends_on('r-biocgenerics@0.15.10:', type=('build', 'run'))
depends_on('r-biocfilecache@1.5.1:', type=('build', 'run'), when='@2.16.1:')
depends_on('r-rsqlite', type=('build', 'run'))
depends_on('r-biocmanager', type=('build', 'run'), when='@2.14.5:')
depends_on('r-biocversion', type=('build', 'run'), when='@2.22.0:')
depends_on('r-curl', type=('build', 'run'), when='@2.10.1:')
depends_on('r-rappdirs', type=('build', 'run'), when='@2.16.1:')
depends_on('r-annotationdbi@1.31.19:', type=('build', 'run'))
depends_on('r-s4vectors', type=('build', 'run'))
depends_on('r-interactivedisplaybase', type=('build', 'run'))
depends_on('r-httr', type=('build', 'run'))
depends_on('r-yaml', type=('build', 'run'))
depends_on('r-dplyr', type=('build', 'run'), when='@2.16.1:')
depends_on('r-biocinstaller', type=('build', 'run'), when='@:2.16.1')
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