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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RBeachmat(RPackage):
"""Compiling Bioconductor to Handle Each Matrix Type.
Provides a consistent C++ class interface for reading from and writing
data to a variety of commonly used matrix types. Ordinary matrices and
several sparse/dense Matrix classes are directly supported, third-party
S4 classes may be supported by external linkage, while all other
matrices are handled by DelayedArray block processing."""
bioc = "beachmat"
version('2.10.0', commit='b7cc532d4a5b26d9073135cc9945258ea08e5079')
version('2.6.4', commit='7d9dc6379017d723dda3e8dc9fd1f6de7fd33cdb')
version('2.0.0', commit='2bdac6ce7b636fd16f78641a0bcc2181670107ab')
version('1.4.0', commit='e3b7a21cae0080d077a0d40e35d1d148f088720a')
version('1.2.1', commit='ebae81772045a314e568c2f7d73ea3b27e7bf7d8')
version('1.0.2', commit='6bd57b91d6428ac916f46572d685d3cb01a757f7')
depends_on('r@3.4:', type=('build', 'run'))
depends_on('r@3.5:', type=('build', 'run'), when='@1.2.1:1.4.0')
depends_on('r-delayedarray', type=('build', 'run'))
depends_on('r-delayedarray@0.5.30:', type=('build', 'run'), when='@1.2.1')
depends_on('r-delayedarray@0.7.38:', type=('build', 'run'), when='@1.4.0')
depends_on('r-delayedarray@0.15.14:', type=('build', 'run'), when='@2.6.4')
depends_on('r-biocgenerics', type=('build', 'run'), when='@1.4.0:')
depends_on('r-matrix', type=('build', 'run'), when='@2.6.4:')
depends_on('r-rcpp@0.12.14:', type=('build', 'run'), when='@1.0.2:1.4.0')
depends_on('r-rcpp', type=('build', 'run'), when='@2.10.0:')
depends_on('r-rhdf5lib', type=('build', 'run'), when='@1.0.2:1.4.0')
depends_on('r-rhdf5lib@1.1.4:', type=('build', 'run'), when='@1.2.1')
depends_on('r-hdf5array', type=('build', 'run'), when='@1.0.2:1.4.0')
depends_on('r-hdf5array@1.7.3:', type=('build', 'run'), when='@1.2.1')
depends_on('r-hdf5array@1.9.5:', type=('build', 'run'), when='@1.4.0')
depends_on('r-rhdf5', type=('build', 'run'), when='@1.0.2:1.4.0')
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