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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RBsseq(RPackage):
"""Analyze, manage and store bisulfite sequencing data.
A collection of tools for analyzing and visualizing bisulfite sequencing
data."""
bioc = "bsseq"
version('1.30.0', commit='7eb5223e9ee02fd08a52be56eaa9316a67c0d66b')
version('1.26.0', commit='fae32292687625012a2938a48c93df55ad4257b5')
version('1.24.4', commit='8fe7a03')
version('1.22.0', commit='d4f7301')
version('1.20.0', commit='07e398b')
depends_on('r@3.5:', type=('build', 'run'))
depends_on('r@4.0:', type=('build', 'run'), when='@1.26.0:')
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-genomicranges@1.29.14:', type=('build', 'run'))
depends_on('r-genomicranges@1.33.6:', type=('build', 'run'), when='@1.24.4:')
depends_on('r-genomicranges@1.41.5:', type=('build', 'run'), when='@1.26.0:')
depends_on('r-summarizedexperiment@1.9.18:', type=('build', 'run'))
depends_on('r-summarizedexperiment@1.17.4:', type=('build', 'run'), when='@1.24.4:')
depends_on('r-summarizedexperiment@1.19.5:', type=('build', 'run'), when='@1.26.0:')
depends_on('r-iranges@2.11.16:', type=('build', 'run'))
depends_on('r-iranges@2.22.2:', type=('build', 'run'), when='@1.24.4:')
depends_on('r-iranges@2.23.9:', type=('build', 'run'), when='@1.26.0:')
depends_on('r-genomeinfodb', type=('build', 'run'))
depends_on('r-scales', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-locfit', type=('build', 'run'))
depends_on('r-gtools', type=('build', 'run'))
depends_on('r-data-table@1.11.8:', type=('build', 'run'))
depends_on('r-s4vectors', type=('build', 'run'))
depends_on('r-s4vectors@0.23.11:', type=('build', 'run'), when='@1.22.0:')
depends_on('r-s4vectors@0.25.14:', type=('build', 'run'), when='@1.24.4:')
depends_on('r-s4vectors@0.27.12:', type=('build', 'run'), when='@1.26.0:')
depends_on('r-r-utils@2.0.0:', type=('build', 'run'))
depends_on('r-delayedmatrixstats@1.5.2:', type=('build', 'run'))
depends_on('r-permute', type=('build', 'run'))
depends_on('r-limma', type=('build', 'run'))
depends_on('r-delayedarray@0.9.8:', type=('build', 'run'))
depends_on('r-delayedarray@0.15.16:', type=('build', 'run'), when='@1.26.0:')
depends_on('r-rcpp', type=('build', 'run'))
depends_on('r-biocparallel', type=('build', 'run'))
depends_on('r-bsgenome', type=('build', 'run'))
depends_on('r-biostrings', type=('build', 'run'))
depends_on('r-hdf5array@1.11.9:', type=('build', 'run'))
depends_on('r-hdf5array@1.15.19:', type=('build', 'run'), when='@1.26.0:')
depends_on('r-hdf5array@1.19.11:', type=('build', 'run'), when='@1.30.0:')
depends_on('r-rhdf5', type=('build', 'run'))
depends_on('r-beachmat', type=('build', 'run'))
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