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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RBumphunter(RPackage):
"""Tools for finding bumps in genomic data"""
homepage = "http://bioconductor.org/packages/bumphunter/"
git = "https://git.bioconductor.org/packages/bumphunter.git"
version('1.16.0', commit='1c3ab4d1fd2d75b1586ccef12665960b3602080a')
depends_on('r-s4vectors', type=('build', 'run'))
depends_on('r-iranges', type=('build', 'run'))
depends_on('r-genomeinfodb', type=('build', 'run'))
depends_on('r-genomicranges', type=('build', 'run'))
depends_on('r-foreach', type=('build', 'run'))
depends_on('r-iterators', type=('build', 'run'))
depends_on('r-locfit', type=('build', 'run'))
depends_on('r-matrixstats', type=('build', 'run'))
depends_on('r-limma', type=('build', 'run'))
depends_on('r-dorng', type=('build', 'run'))
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-genomicfeatures', type=('build', 'run'))
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r@3.4.0:3.4.9', when='@1.16.0')
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