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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RClusterprofiler(RPackage):
    """statistical analysis and visualization of functional profiles for genes
       and gene clusters

       This package implements methods to analyze and visualize functional
       profiles (GO and KEGG) of gene and gene clusters."""

    homepage = "https://bioconductor.org/packages/clusterProfiler"
    git      = "https://git.bioconductor.org/packages/clusterProfiler.git"

    version('3.18.0', commit='064a6e612ce27e260e33af78b907bee4065ff821')
    version('3.12.0', commit='6ec88d10832bdfd938e9c065b377015eedb7eee2')
    version('3.10.1', commit='39927ef7ff6f97e27557bcf4147e2133b364fd3c')
    version('3.8.1', commit='81e1a7ac49e4713703c55f87f945b20de5e7ab36')
    version('3.6.0', commit='ff15e3dba69b93bc872d5f5d07821cd9ae20d829')
    version('3.4.4', commit='b86b00e8405fe130e439362651a5567736e2d9d7')

    depends_on('r@3.3.1:', type=('build', 'run'))
    depends_on('r@3.4.0:', when='@3.8.1:', type=('build', 'run'))
    depends_on('r-annotationdbi', type=('build', 'run'))
    depends_on('r-downloader', when='@3.18.0:', type=('build', 'run'))
    depends_on('r-dose@3.1.3:', type=('build', 'run'))
    depends_on('r-dose@3.3.2:', when='@3.6.0:', type=('build', 'run'))
    depends_on('r-dose@3.5.1:', when='@3.8.1:', type=('build', 'run'))
    depends_on('r-dose@3.13.1:', when='@3.18.0:', type=('build', 'run'))
    depends_on('r-dplyr', when='@3.18.0:', type=('build', 'run'))
    depends_on('r-enrichplot@0.99.7:', when='@3.8.1:', type=('build', 'run'))
    depends_on('r-enrichplot@1.9.3:', when='@3.18.0:', type=('build', 'run'))
    depends_on('r-go-db', type=('build', 'run'))
    depends_on('r-gosemsim', type=('build', 'run'))
    depends_on('r-gosemsim@2.0.0:', when='@3.4.4:3.6.0', type=('build', 'run'))
    depends_on('r-magrittr', type=('build', 'run'))
    depends_on('r-plyr', type=('build', 'run'))
    depends_on('r-qvalue', type=('build', 'run'))
    depends_on('r-rlang', when='@3.18.0:', type=('build', 'run'))
    depends_on('r-rvcheck', type=('build', 'run'))
    depends_on('r-tidyr', type=('build', 'run'))
    depends_on('r-ggplot2', when='@:3.12.0', type=('build', 'run'))