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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RClusterprofiler(RPackage):
"""statistical analysis and visualization of functional profiles for genes
and gene clusters.
This package implements methods to analyze and visualize functional
profiles (GO and KEGG) of gene and gene clusters."""
homepage = "https://bioconductor.org/packages/clusterProfiler"
git = "https://git.bioconductor.org/packages/clusterProfiler.git"
version('3.12.0', commit='6ec88d10832bdfd938e9c065b377015eedb7eee2')
version('3.10.1', commit='39927ef7ff6f97e27557bcf4147e2133b364fd3c')
version('3.8.1', commit='81e1a7ac49e4713703c55f87f945b20de5e7ab36')
version('3.6.0', commit='ff15e3dba69b93bc872d5f5d07821cd9ae20d829')
version('3.4.4', commit='b86b00e8405fe130e439362651a5567736e2d9d7')
depends_on('r@3.3.1:', type=('build', 'run'))
depends_on('r-dose@3.1.3:', type=('build', 'run'))
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-ggplot2', type=('build', 'run'))
depends_on('r-go-db', type=('build', 'run'))
depends_on('r-gosemsim@2.0.0:', when='@3.4.4:3.6.0', type=('build', 'run'))
depends_on('r-gosemsim', type=('build', 'run'))
depends_on('r-magrittr', type=('build', 'run'))
depends_on('r-plyr', type=('build', 'run'))
depends_on('r-qvalue', type=('build', 'run'))
depends_on('r-rvcheck', type=('build', 'run'))
depends_on('r-tidyr', type=('build', 'run'))
depends_on('r-dose@3.3.2:', when='@3.6.0:', type=('build', 'run'))
depends_on('r@3.4.0:', when='@3.8.1:', type=('build', 'run'))
depends_on('r-dose@3.5.1:', when='@3.8.1:', type=('build', 'run'))
depends_on('r-enrichplot@0.99.7:', when='@3.8.1:', type=('build', 'run'))
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