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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RCondop(RPackage):
"""Condition-Dependent Operon Predictions.
An implementation of the computational strategy for the comprehensive
analysis of condition-dependent operon maps in prokaryotes proposed by
Fortino et al. (2014) <doi:10.1186/1471-2105-15-145>. It uses RNA-seq
transcriptome profiles to improve prokaryotic operon map inference."""
cran = "CONDOP"
version("1.0", sha256="3a855880f5c6b33f949c7e6de53c8e014b4d72b7024a93878b344d3e52b5296a")
depends_on("r-mclust", type=("build", "run"))
depends_on("r-earth", type=("build", "run"))
depends_on("r-plyr", type=("build", "run"))
depends_on("r-seqinr", type=("build", "run"))
depends_on("r-randomforest", type=("build", "run"))
depends_on("r-rminer", type=("build", "run"))
depends_on("r-genomicranges", type=("build", "run"))
depends_on("r-genomeinfodb", type=("build", "run"))
depends_on("r-s4vectors", type=("build", "run"))
depends_on("r-iranges", type=("build", "run"))
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