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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RCondop(RPackage):
"""CONDOP: Condition-Dependent Operon Predictions.
An implementation of the computational strategy for the comprehensive
analysis of condition-dependent operon maps in prokaryotes proposed by
Fortino et al. (2014) <doi:10.1186/1471-2105-15-145>. It uses RNA-seq
transcriptome profiles to improve prokaryotic operon map inference."""
homepage = "https://cloud.r-project.org/package=CONDOP"
url = "https://cloud.r-project.org/src/contrib/CONDOP_1.0.tar.gz"
list_url = "https://cloud.r-project.org/src/contrib/Archive/CONDOP"
version('1.0', sha256='3a855880f5c6b33f949c7e6de53c8e014b4d72b7024a93878b344d3e52b5296a')
depends_on('r-mclust', type=('build', 'run'))
depends_on('r-earth', type=('build', 'run'))
depends_on('r-plyr', type=('build', 'run'))
depends_on('r-seqinr', type=('build', 'run'))
depends_on('r-randomforest', type=('build', 'run'))
depends_on('r-rminer', type=('build', 'run'))
depends_on('r-genomicranges', type=('build', 'run'))
depends_on('r-genomeinfodb', type=('build', 'run'))
depends_on('r-s4vectors', type=('build', 'run'))
depends_on('r-iranges', type=('build', 'run'))
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