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# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RCorhmm(RPackage):
"""corHMM: Analysis of Binary Character Evolution
Fits a hidden rates model that allows different transition rate classes
on different portions of a phylogeny by treating rate classes as hidden
states in a Markov process and various other functions for evaluating
models of binary character evolution."""
homepage = "https://cloud.r-project.org/package=corHMM"
url = "https://cloud.r-project.org/src/contrib/corHMM_1.22.tar.gz"
list_url = "https://cloud.r-project.org/src/contrib/Archive/corHMM/"
version('1.22', sha256='d262fa1183eab32087afb70f1789fabae6fb49bec01d627974c54a088a48b10d')
depends_on('r-ape', type=('build', 'run'))
depends_on('r-nloptr', type=('build', 'run'))
depends_on('r-gensa', type=('build', 'run'))
depends_on('r-expm', type=('build', 'run'))
depends_on('r-numderiv', type=('build', 'run'))
depends_on('r-nnet', type=('build', 'run'))
depends_on('r-corpcor', type=('build', 'run'))
depends_on('r-phangorn', type=('build', 'run'))
depends_on('r-rmpfr', type=('build', 'run'))
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