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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RDeseq(RPackage):
"""Differential gene expression analysis based on the negative binomial
distribution.
Estimate variance-mean dependence in count data from high-throughput
sequencing assays and test for differential expression based on a model
using the negative binomial distribution"""
homepage = "https://bioconductor.org/packages/DESeq"
git = "https://git.bioconductor.org/packages/DESeq.git"
version('1.36.0', commit='db4af67b49d3bd8c321d19efbe9415cd2e4ddb7e')
version('1.34.1', commit='e86f1b03a30bc02de4bfd4a0759af2f65cb48c62')
version('1.32.0', commit='e3d623b815b53d79eae7cdd09d097cc6098d28c9')
version('1.30.0', commit='90c93d991dd980d538c13b0361d3345f9546794e')
version('1.28.0', commit='738371466e6ccf00179fd35b617c8ba0e1e91630')
depends_on('r-biocgenerics@0.7.5:', type=('build', 'run'))
depends_on('r-biobase@2.21.7:', type=('build', 'run'))
depends_on('r-locfit', type=('build', 'run'))
depends_on('r-lattice', type=('build', 'run'))
depends_on('r-genefilter', type=('build', 'run'))
depends_on('r-geneplotter', type=('build', 'run'))
depends_on('r-mass', type=('build', 'run'))
depends_on('r-rcolorbrewer', type=('build', 'run'))
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