1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
|
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RDeseq(RPackage):
"""Estimate variance-mean dependence in count data from
high-throughput sequencing assays and test for differential
expression based on a model using the negative binomial
distribution."""
homepage = "https://www.bioconductor.org/packages/DESeq/"
git = "https://git.bioconductor.org/packages/DESeq.git"
version('1.28.0', commit='738371466e6ccf00179fd35b617c8ba0e1e91630')
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-locfit', type=('build', 'run'))
depends_on('r-lattice', type=('build', 'run'))
depends_on('r-genefilter', type=('build', 'run'))
depends_on('r-geneplotter', type=('build', 'run'))
depends_on('r-mass', type=('build', 'run'))
depends_on('r-rcolorbrewer', type=('build', 'run'))
|
