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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RExomedepth(RPackage):
"""Calls Copy Number Variants from Targeted Sequence Data.
Calls copy number variants (CNVs) from targeted sequence data, typically
exome sequencing experiments designed to identify the genetic basis of
Mendelian disorders."""
cran = "ExomeDepth"
version("1.1.16", sha256="7ba6b51e7ea435a2799b25d99bb9f48e2b1e99e15e47f88e514e98120b4cebe4")
version("1.1.15", sha256="112bcb536f5766d9d0b55e064feedd6727ccab14cb1edfdba1f0d7b890e55ad2")
depends_on("r@3.4.0:", type=("build", "run"))
depends_on("r-biostrings", type=("build", "run"))
depends_on("r-iranges", type=("build", "run"))
depends_on("r-rsamtools", type=("build", "run"))
depends_on("r-genomicranges@1.23.0:", type=("build", "run"))
depends_on("r-aod", type=("build", "run"))
depends_on("r-vgam@0.8.4:", type=("build", "run"))
depends_on("r-genomicalignments", type=("build", "run"))
depends_on("r-dplyr", type=("build", "run"))
depends_on("r-magrittr", type=("build", "run"))
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