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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RFgsea(RPackage):
"""Fast Gene Set Enrichment Analysis
The package implements an algorithm for fast gene set enrichment
analysis. Using the fast algorithm allows to make more permutations and
get more fine grained p-values, which allows to use accurate stantard
approaches to multiple hypothesis correction."""
homepage = "https://bioconductor.org/packages/fgsea"
git = "https://git.bioconductor.org/packages/fgsea.git"
version('1.16.0', commit='9d9df596c7e160afa18e067b7637cfc465494318')
version('1.10.1', commit='fb06a6ebfb4a195e77e37226d100a2148b90c5f3')
version('1.8.0', commit='bb2898aca9fb23e90770671a83fe23f79bb1841b')
version('1.6.0', commit='52b801b7c2dfd8238fa8f2b402fddb4fda60271d')
version('1.4.1', commit='73de5ff364e520ac99507a9ee5a61a0d23d3c44e')
version('1.2.1', commit='99b04eef664204d0dca4b9f8027cd7eefb006b72')
depends_on('r@3.3:', type=('build', 'run'))
depends_on('r-rcpp', type=('build', 'run'))
depends_on('r-data-table', type=('build', 'run'))
depends_on('r-biocparallel', type=('build', 'run'))
depends_on('r-ggplot2@2.2.0:', type=('build', 'run'))
depends_on('r-gridextra', type=('build', 'run'))
depends_on('r-fastmatch', type=('build', 'run'))
depends_on('r-matrix', when='@1.6.0:', type=('build', 'run'))
depends_on('r-bh', when='@1.10.1:', type=('build', 'run'))
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