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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RGenomicranges(RPackage):
"""Representation and manipulation of genomic intervals.
The ability to efficiently represent and manipulate genomic annotations
and alignments is playing a central role when it comes to analyzing
high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges
package defines general purpose containers for storing and manipulating
genomic intervals and variables defined along a genome. More specialized
containers for representing and manipulating short alignments against a
reference genome, or a matrix-like summarization of an experiment, are
defined in the GenomicAlignments and SummarizedExperiment packages,
respectively. Both packages build on top of the GenomicRanges
infrastructure."""
bioc = "GenomicRanges"
version('1.48.0', commit='2bce60814db7c20949892587740fb484aa435978')
version('1.46.1', commit='e422642f64815cdfee8fc340681ad87a7eafc3bb')
version('1.42.0', commit='32baca734b599d60fa13bdbe31c5712e648f538d')
version('1.36.1', commit='418e7e5647dd54d81b804455ddfcbc027fd0164a')
version('1.34.0', commit='ebaad5ca61abb67c2c30c132e07531ba4257bccd')
version('1.32.7', commit='4c56dc836dbfd0d228dc810e8d401811cdbc267c')
version('1.30.3', commit='e99979054bc50ed8c0109bc54563036c1b368997')
version('1.28.6', commit='197472d618f3ed04c795dc6ed435500c29619563')
depends_on('r@2.10:', type=('build', 'run'))
depends_on('r@4.0.0:', type=('build', 'run'), when='@1.46.1:')
depends_on('r-biocgenerics@0.21.2:', type=('build', 'run'))
depends_on('r-biocgenerics@0.25.3:', type=('build', 'run'), when='@1.32.7:')
depends_on('r-biocgenerics@0.37.0:', type=('build', 'run'), when='@1.46.1:')
depends_on('r-s4vectors@0.9.47:', type=('build', 'run'))
depends_on('r-s4vectors@0.17.32:', type=('build', 'run'), when='@1.32.7:')
depends_on('r-s4vectors@0.19.11:', type=('build', 'run'), when='@1.34.0:')
depends_on('r-s4vectors@0.27.12:', type=('build', 'run'), when='@1.42.0:')
depends_on('r-iranges@2.9.11:', type=('build', 'run'))
depends_on('r-iranges@2.11.16:', type=('build', 'run'), when='@1.30.3:')
depends_on('r-iranges@2.14.4:', type=('build', 'run'), when='@1.32.7:')
depends_on('r-iranges@2.15.12:', type=('build', 'run'), when='@1.34.0:')
depends_on('r-iranges@2.17.1:', type=('build', 'run'), when='@1.36.1:')
depends_on('r-iranges@2.23.9:', type=('build', 'run'), when='@1.42.0:')
depends_on('r-genomeinfodb@1.11.5:', type=('build', 'run'))
depends_on('r-genomeinfodb@1.13.1:', type=('build', 'run'), when='@1.30.3:')
depends_on('r-genomeinfodb@1.15.2:', type=('build', 'run'), when='@1.32.7:')
depends_on('r-xvector', type=('build', 'run'))
depends_on('r-xvector@0.19.8:', type=('build', 'run'), when='@1.32.7:')
depends_on('r-xvector@0.29.2:', type=('build', 'run'), when='@1.42.0:')
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