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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RGosemsim(RPackage):
"""The semantic comparisons of Gene Ontology (GO) annotations provide
quantitative ways to compute similarities between genes and gene
groups, and have became important basis for many bioinformatics
analysis approaches. GOSemSim is an R package for semantic similarity
computation among GO terms, sets of GO terms, gene products and gene
clusters. GOSemSim implemented five methods proposed by Resnik,
Schlicker, Jiang, Lin and Wang respectively."""
homepage = "https://www.bioconductor.org/packages/GOSemSim/"
git = "https://git.bioconductor.org/packages/GOSemSim.git"
version('2.2.0', commit='247434790e6c8cf99e5643f569390362b8c87c52')
depends_on('r@3.4.0:3.4.9', when='@2.2.0')
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-go-db', type=('build', 'run'))
depends_on('r-rcpp', type=('build', 'run'))
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