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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RGoseq(RPackage):
"""Gene Ontology analyser for RNA-seq and other length biased data.
Detects Gene Ontology and/or other user defined categories which are
over/under represented in RNA-seq data"""
bioc = "goseq"
version('1.46.0', commit='1fb5626cc80f595499af511a830322ed12bbe144')
version('1.42.0', commit='8164b90e7505bbc1035105fdc15219c764ef8b8d')
version('1.36.0', commit='26c9f7de18889afeee1b571ca1c4ab4d2877ab80')
version('1.34.1', commit='bad217b42cc34423698fbcf701d4e3591aac4474')
version('1.32.0', commit='32fcbe647eea17d7d0d7a262610811502c421d36')
version('1.30.0', commit='fa8cafe0766ed0b6a97a4ed3374a709ed9d1daf1')
version('1.28.0', commit='ed0ce332a8972618d740d8a93711dff994657738')
depends_on('r@2.11.0:', type=('build', 'run'))
depends_on('r-biasedurn', type=('build', 'run'))
depends_on('r-genelendatabase@1.9.2:', type=('build', 'run'))
depends_on('r-mgcv', type=('build', 'run'))
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-go-db', type=('build', 'run'))
depends_on('r-biocgenerics', type=('build', 'run'))
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