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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RGviz(RPackage):
"""Genomic data analyses requires integrated visualization
of known genomic information and new experimental data. Gviz
uses the biomaRt and the rtracklayer packages to perform live
annotation queries to Ensembl and UCSC and translates this to
e.g. gene/transcript structures in viewports of the grid
graphics package. This results in genomic information plotted
together with your data."""
homepage = "http://bioconductor.org/packages/Gviz/"
git = "https://git.bioconductor.org/packages/Gviz.git"
version('1.20.0', commit='299b8255e1b03932cebe287c3690d58c88f5ba5c')
depends_on('r@3.4.0:3.4.9', when='@1.20.0')
depends_on('r-s4vectors', type=('build', 'run'))
depends_on('r-iranges', type=('build', 'run'))
depends_on('r-genomicranges', type=('build', 'run'))
depends_on('r-xvector', type=('build', 'run'))
depends_on('r-rtracklayer', type=('build', 'run'))
depends_on('r-lattice', type=('build', 'run'))
depends_on('r-rcolorbrewer', type=('build', 'run'))
depends_on('r-biomart', type=('build', 'run'))
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-genomicfeatures', type=('build', 'run'))
depends_on('r-bsgenome', type=('build', 'run'))
depends_on('r-biostrings', type=('build', 'run'))
depends_on('r-biovizbase', type=('build', 'run'))
depends_on('r-rsamtools', type=('build', 'run'))
depends_on('r-latticeextra', type=('build', 'run'))
depends_on('r-matrixstats', type=('build', 'run'))
depends_on('r-genomicalignments', type=('build', 'run'))
depends_on('r-genomeinfodb', type=('build', 'run'))
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-digest', type=('build', 'run'))
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