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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RMzr(RPackage):
"""mzR provides a unified API to the common file formats and parsers
available for mass spectrometry data. It comes with a wrapper for the
ISB random access parser for mass spectrometry mzXML, mzData and mzML
files. The package contains the original code written by the ISB, and a
subset of the proteowizard library for mzML and mzIdentML. The netCDF
reading code has previously been used in XCMS."""
homepage = "https://www.bioconductor.org/packages/mzR/"
git = "https://git.bioconductor.org/packages/mzR.git"
version('2.10.0', commit='a6168b68e48c281e88de9647254a8db1e21df388')
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-protgenerics', type=('build', 'run'))
depends_on('r-rcpp', type=('build', 'run'))
depends_on('r-zlibbioc', type=('build', 'run'))
depends_on('netcdf')
depends_on('r@3.4.0:3.4.9', when='@2.10.0')
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