summaryrefslogtreecommitdiff
path: root/var/spack/repos/builtin/packages/r-paleotree/package.py
blob: 030deeb29cee1a0242a98c4eea32c9b0e6ecf6c5 (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)


from spack import *


class RPaleotree(RPackage):
    """Paleontological and Phylogenetic Analyses of Evolution

    Provides tools for transforming, a posteriori time-scaling, and modifying
    phylogenies containing extinct (i.e. fossil) lineages"""

    homepage = "https://github.com/dwbapst/paleotree"
    url      = "https://cloud.r-project.org/src/contrib/paleotree_3.1.3.tar.gz"
    list_url = "https://cloud.r-project.org/src/contrib/Archive/paleotree"

    version('3.3.25', sha256='aa64b9120075581229439227a12db776d052b03eb5f9721692a16a9402ac8712')
    version('3.3.0', sha256='f8f6b0228dd5290b251cad3a8626689442b5aa793d8f072c8c2c7813a063df90')
    version('3.1.3', sha256='4c1cc8a5e171cbbbd88f78914f86d5e6d144ae573816fbeeff2ab54a814ec614')

    depends_on('r@3.0.0:', type=('build', 'run'))
    depends_on('r-ape@4.1:', type=('build', 'run'))
    depends_on('r-phangorn@2.0.0:', type=('build', 'run'))
    depends_on('r-phytools@0.6-00:', type=('build', 'run'))
    depends_on('r-jsonlite', when='@3.3.0:', type=('build', 'run'))
    depends_on('r-png', when='@3.3.0:', type=('build', 'run'))
    depends_on('r-rcurl', when='@3.3.0:', type=('build', 'run'))