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# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RPhantompeakqualtools(RPackage):
"""Computes informative enrichment and quality measures for
ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. This is a modified version
of r-spp to be used in conjunction with the phantompeakqualtools
package."""
homepage = "https://github.com/kundajelab/phantompeakqualtools"
url = "https://github.com/kundajelab/phantompeakqualtools/raw/master/spp_1.14.tar.gz"
version('1.14', '4de207d570999170c1bf45bcba8c6d2d')
depends_on('boost@1.41.0:')
depends_on('r-catools', type=('build', 'run'))
depends_on('r-snow', type=('build', 'run'))
depends_on('r-snowfall', type=('build', 'run'))
depends_on('r-bitops', type=('build', 'run'))
depends_on('r-rsamtools', type=('build', 'run'))
conflicts('%gcc@6:')
def setup_environment(self, spack_env, run_env):
spack_env.set('BOOST_ROOT', self.spec['boost'].prefix)
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