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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RQuantro(RPackage):
"""A data-driven test for the assumptions of quantile normalization using
raw data such as objects that inherit eSets (e.g. ExpressionSet,
MethylSet). Group level information about each sample (such as
Tumor / Normal status) must also be provided because the test assesses
if there are global differences in the distributions between the
user-defined groups."""
homepage = "https://www.bioconductor.org/packages/quantro/"
git = "https://git.bioconductor.org/packages/quantro.git"
version('1.10.0', commit='111337c0aba052aa49c3d2e2d3042794b28858c9')
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-minfi', type=('build', 'run'))
depends_on('r-doparallel', type=('build', 'run'))
depends_on('r-foreach', type=('build', 'run'))
depends_on('r-iterators', type=('build', 'run'))
depends_on('r-ggplot2', type=('build', 'run'))
depends_on('r-rcolorbrewer', type=('build', 'run'))
depends_on('r@3.4.0:3.4.9', when='@1.10.0')
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