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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RReportingtools(RPackage):
"""The ReportingTools software package enables users to easily
display reports of analysis results generated from sources such
as microarray and sequencing data. The package allows users to
create HTML pages that may be viewed on a web browser such as
Safari, or in other formats readable by programs such as Excel.
Users can generate tables with sortable and filterable columns,
make and display plots, and link table entries to other data
sources such as NCBI or larger plots within the HTML page. Using
the package, users can also produce a table of contents page to
link various reports together for a particular project that can
be viewed in a web browser. For more examples, please visit our
site: http:// research-pub.gene.com/ReportingTools."""
homepage = "https://bioconductor.org/packages/ReportingTools/"
git = "https://git.bioconductor.org/packages/ReportingTools.git"
version('2.16.0', commit='b1aa0ea302da7f2993ce8087b1d09c11ddf03663')
depends_on('r@3.4.0:3.4.9', when='@2.16.0')
depends_on('r-knitr', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-hwriter', type=('build', 'run'))
depends_on('r-category', type=('build', 'run'))
depends_on('r-gostats', type=('build', 'run'))
depends_on('r-limma', type=('build', 'run'))
depends_on('r-limma', type=('build', 'run'))
depends_on('r-lattice', type=('build', 'run'))
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-edger', type=('build', 'run'))
depends_on('r-annotate', type=('build', 'run'))
depends_on('r-pfam-db', type=('build', 'run'))
depends_on('r-gseabase', type=('build', 'run'))
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-xml', type=('build', 'run'))
depends_on('r-utils', type=('build', 'run'))
depends_on('r-deseq2', type=('build', 'run'))
depends_on('r-ggplot2', type=('build', 'run'))
depends_on('r-ggbio', type=('build', 'run'))
depends_on('r-iranges', type=('build', 'run'))
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