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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RRstan(RPackage):
"""R Interface to Stan.
User-facing R functions are provided to parse, compile, test, estimate, and
analyze Stan models by accessing the header-only Stan library provided by
the 'StanHeaders' package. The Stan project develops a probabilistic
programming language that implements full Bayesian statistical inference
via Markov Chain Monte Carlo, rough Bayesian inference via variational
approximation, and (optionally penalized) maximum likelihood estimation via
optimization. In all three cases, automatic differentiation is used to
quickly and accurately evaluate gradients without burdening the user with
the need to derive the partial derivatives."""
cran = "rstan"
license("GPL-3.0-or-later")
version("2.21.8", sha256="b2d4edc315419037970c9fa2e8740b934966d88d40548152811f3d4a28475075")
version("2.21.7", sha256="4495221310d390925b665c32e05ffabd3ae8857225bda65131a7ed2be41d6d45")
version("2.21.5", sha256="86e4fe562d8ddcd0b02336f35a420fa8786dd21de7ca2bebb4ed6e9c252bb9ea")
version("2.21.3", sha256="76bcbf1cb246a202e5680ea6e91bb4142ce19156e8960a9850f6ea0e206f92b1")
version("2.21.2", sha256="e30e04d38a612e2cb3ac69b53eaa19f7ede8b3548bf82f7892a2e9991d46054a")
version("2.19.2", sha256="31e4ceb9c327cd62873225097ffa538c2ac4cb0547c52271e52e4c7652d508da")
version("2.18.2", sha256="4d75dad95610d5a1d1c89a4ddbaf4326462e4ffe0ad28aed2129f2d9292e70ff")
version("2.17.2", sha256="a7b197e6e42f8f0c302da9205afc19a0261eaf6af1425854303d2ce6cbd36729")
version("2.10.1", sha256="4d2040742607f8675633c6b8c0a2e810f2fe3077f9242b1edfd42642613a8294")
depends_on("r+X", type=("build", "run"))
depends_on("r@3.0.2:", type=("build", "run"))
depends_on("r@3.4.0:", type=("build", "run"), when="@2.18.1:")
depends_on("r-stanheaders@2.18.1:", type=("build", "run"))
depends_on("r-stanheaders@2.21.0:", type=("build", "run"), when="@2.21.2:")
depends_on("r-ggplot2@2.0.0:", type=("build", "run"))
depends_on("r-ggplot2@3.0.0:", type=("build", "run"), when="@2.21.2:")
depends_on("r-inline", type=("build", "run"))
depends_on("r-gridextra@2.0.0:", type=("build", "run"))
depends_on("r-rcpp@0.12.0:", type=("build", "run"))
depends_on("r-rcppparallel@5.0.1:", type=("build", "run"), when="@2.21.2:")
depends_on("r-loo@2.0.0:", type=("build", "run"), when="@2.18:")
depends_on("r-loo@2.3.0:", type=("build", "run"), when="@2.21.2:")
depends_on("r-pkgbuild", type=("build", "run"), when="@2.18:")
depends_on("r-rcppeigen@0.3.3.3.0:", type=("build", "run"))
depends_on("r-bh@1.69.0:", type=("build", "run"))
depends_on("r-bh@1.72.0-2:", type=("build", "run"), when="@2.21.2:")
depends_on("gmake", type="build")
depends_on("pandoc", type="build")
depends_on("r-withr", type=("build", "run"), when="@2.21.2")
depends_on("r-v8", type=("build", "run"), when="@2.21.2")
conflicts("%gcc@:4.9", when="@2.18:")
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