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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class RSeqlogo(RPackage):
    """Sequence logos for DNA sequence alignments.

       seqLogo takes the position weight matrix of a DNA sequence motif and
       plots the corresponding sequence logo as introduced by Schneider and
       Stephens (1990)."""

    bioc = "seqLogo"

    version('1.62.0', commit='f2d0b53b1411ea98299201a8125a85f4cbf7c9cd')
    version('1.60.0', commit='4115c8e1d01accb8c8cc1cf96f23359466827e16')
    version('1.56.0', commit='169260c43fc58dc75becb3b7842cac3d0038a8d5')
    version('1.50.0', commit='57986221c90c3920f9829756c4b3ee566dc1e14d')
    version('1.48.0', commit='dde85582e7fd0c08c5b8bc73f9aed8f23b727d9d')
    version('1.46.0', commit='e78be03db5f6a516138aeea6aa9512685633a4a2')
    version('1.44.0', commit='4cac14ff29f413d6de1a9944eb5d21bfe5045fac')
    version('1.42.0', commit='d7e04726c813282aa3f47a9ee98c5e1cec9bdddd')

    depends_on('r@4.2:', type=('build', 'run'), when='@1.62.0:')