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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RSimpleaffy(RPackage):
"""Very simple high level analysis of Affymetrix data.
Provides high level functions for reading Affy .CEL files, phenotypic
data, and then computing simple things with it, such as t-tests, fold
changes and the like. Makes heavy use of the affy library. Also has some
basic scatter plot functions and mechanisms for generating high
resolution journal figures..."""
bioc = "simpleaffy"
version('2.66.0', commit='902db69e4ea4b6d306f0c744d3be600f1418ebc9')
version('2.60.0', commit='b32b5e7d5c65e43c10f98ab8684a1086a06d04f9')
version('2.58.0', commit='70cf1199bad620f60eaa288279632110bb571200')
version('2.56.0', commit='a05d768180b8713ad9e1dc46d491b7ef389b299d')
version('2.54.0', commit='6876e028d412b14504ad3915cbec1a189e9c6478')
version('2.52.0', commit='f2b43fb9b8e6fa4c03fe28b4efb3144a0a42a385')
depends_on('r@2.0.0:', type=('build', 'run'))
depends_on('r-biocgenerics@0.1.12:', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-affy@1.33.6:', type=('build', 'run'))
depends_on('r-genefilter', type=('build', 'run'))
depends_on('r-gcrma', type=('build', 'run'))
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