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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RSnpstats(RPackage):
"""SnpMatrix and XSnpMatrix classes and methods.
Classes and statistical methods for large SNP association studies. This
extends the earlier snpMatrix package, allowing for uncertainty in
genotypes."""
homepage = "https://bioconductor.org/packages/snpStats"
git = "https://git.bioconductor.org/packages/snpStats.git"
version('1.34.0', commit='e31cdfb18a9e12d70d6a3e8e6fbf7cf8faa3ea5b')
version('1.32.0', commit='7c31158183b4e39da6dc30c7da275acc36b2e32f')
version('1.30.0', commit='0dc1e4246f015feaf2579d60268b10ab5149ce09')
version('1.28.0', commit='8df9f4188f720dfbb4f4f4ec255cd2e22f3f4426')
version('1.26.0', commit='7c9b3304073e0556d694a8531882b349822fdda8')
depends_on('r@2.10.0:', type=('build', 'run'))
depends_on('r-survival', type=('build', 'run'))
depends_on('r-matrix', type=('build', 'run'))
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-zlibbioc', type=('build', 'run'))
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