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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RSomaticsignatures(RPackage):
"""Somatic Signatures
The SomaticSignatures package identifies mutational signatures of single
nucleotide variants (SNVs). It provides a infrastructure related to the
methodology described in Nik-Zainal (2012, Cell), with flexibility in
the matrix decomposition algorithms."""
homepage = "https://bioconductor.org/packages/SomaticSignatures"
git = "https://git.bioconductor.org/packages/SomaticSignatures.git"
version('2.26.0', commit='9d4bed6e118ac76755ffb7abd058b09bac58a9d7')
version('2.20.0', commit='dbedc30d92b600b3a17de596ebe38d15982c70c6')
version('2.18.0', commit='facccd67eee5202fcbe6ad32e667546546e7ccff')
version('2.16.0', commit='4ae348d9fa096c0ec307df95149991edf6044977')
version('2.14.0', commit='b12d24f86e96a7c6a17cbbad21ca14fa3aa7c60f')
version('2.12.1', commit='932298c6877d076004de5541cec85a14e819517a')
depends_on('r@3.1.0:', type=('build', 'run'))
depends_on('r-variantannotation', type=('build', 'run'))
depends_on('r-genomicranges', type=('build', 'run'))
depends_on('r-nmf', type=('build', 'run'))
depends_on('r-s4vectors', type=('build', 'run'))
depends_on('r-iranges', type=('build', 'run'))
depends_on('r-genomeinfodb', type=('build', 'run'))
depends_on('r-biostrings', type=('build', 'run'))
depends_on('r-ggplot2', type=('build', 'run'))
depends_on('r-ggbio', type=('build', 'run'))
depends_on('r-reshape2', type=('build', 'run'))
depends_on('r-nmf', when='@2.26.0:', type=('build', 'run'))
depends_on('r-pcamethods', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-proxy', type=('build', 'run'))
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