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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RSomaticsignatures(RPackage):
"""The SomaticSignatures package identifies mutational signatures of
single nucleotide variants (SNVs). It provides a infrastructure related
to the methodology described in Nik-Zainal (2012, Cell), with
flexibility in the matrix decomposition algorithms."""
homepage = "https://bioconductor.org/packages/SomaticSignatures/"
git = "https://git.bioconductor.org/packages/SomaticSignatures.git"
version('2.12.1', commit='932298c6877d076004de5541cec85a14e819517a')
depends_on('r-variantannotation', type=('build', 'run'))
depends_on('r-genomicranges', type=('build', 'run'))
depends_on('r-nmf', type=('build', 'run'))
depends_on('r-s4vectors', type=('build', 'run'))
depends_on('r-iranges', type=('build', 'run'))
depends_on('r-genomeinfodb', type=('build', 'run'))
depends_on('r-biostrings', type=('build', 'run'))
depends_on('r-ggplot2', type=('build', 'run'))
depends_on('r-ggbio', type=('build', 'run'))
depends_on('r-reshape2', type=('build', 'run'))
depends_on('r-pcamethods', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-proxy', type=('build', 'run'))
depends_on('r@3.4.0:3.4.9', when='@2.12.1')
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