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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RSurvival(Package):
"""Contains the core survival analysis routines, including definition of
Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox
models, and parametric accelerated failure time models."""
homepage = "https://cran.r-project.org/package=survival"
url = "https://cran.r-project.org/src/contrib/survival_2.39-5.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/survival"
version('2.39-5', 'a3cc6b5762e8c5c0bb9e64a276710be2')
extends('R')
depends_on('r-matrix', type=nolink)
def install(self, spec, prefix):
R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir),
self.stage.source_path)
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