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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RTmixclust(RPackage):
"""Time Series Clustering of Gene Expression with Gaussian Mixed-Effects
Models and Smoothing Splines.
Implementation of a clustering method for time series gene expression
data based on mixed-effects models with Gaussian variables and non-
parametric cubic splines estimation. The method can robustly account for
the high levels of noise present in typical gene expression time series
datasets."""
bioc = "TMixClust"
version('1.16.0', commit='e525cfd9c729a73a1964c243e5c34c37343f7bfa')
version('1.12.0', commit='982b31bd7e22a3dc638bbda0336546220444f0c2')
version('1.6.0', commit='9f5f78e52538d15f402c8f6e4c60f7212c7bc548')
version('1.4.0', commit='a52fcae6e7a5dd41e7afbe128f35397e8bc8cb12')
version('1.2.0', commit='0250c0b238f08077b5b9ff17c2f3b7633c67dc3c')
version('1.0.1', commit='0ac800210e3eb9da911767a80fb5582ab33c0cad')
depends_on('r@3.4:', type=('build', 'run'))
depends_on('r-gss', type=('build', 'run'))
depends_on('r-mvtnorm', type=('build', 'run'))
depends_on('r-zoo', type=('build', 'run'))
depends_on('r-cluster', type=('build', 'run'))
depends_on('r-biocparallel', type=('build', 'run'))
depends_on('r-flexclust', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-spem', type=('build', 'run'))
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