1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
|
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RTmixclust(RPackage):
"""Implementation of a clustering method for time series gene expression
data based on mixed-effects models with Gaussian variables and
non-parametric cubic splines estimation. The method can robustly account
for the high levels of noise present in typical gene expression time
series datasets."""
homepage = "https://bioconductor.org/packages/TMixClust/"
git = "https://git.bioconductor.org/packages/TMixClust.git"
version('1.0.1', commit='0ac800210e3eb9da911767a80fb5582ab33c0cad')
depends_on('r-gss', type=('build', 'run'))
depends_on('r-mvtnorm', type=('build', 'run'))
depends_on('r-zoo', type=('build', 'run'))
depends_on('r-cluster', type=('build', 'run'))
depends_on('r-biocparallel', type=('build', 'run'))
depends_on('r-flexclust', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-spem', type=('build', 'run'))
depends_on('r@3.4.3:3.4.9', when='@1.0.1')
|
