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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RTopgo(RPackage):
"""topGO package provides tools for testing GO terms while accounting
for the topology of the GO graph. Different test statistics and
different methods for eliminating local similarities and dependencies
between GO terms can be implemented and applied."""
homepage = "https://www.bioconductor.org/packages/topGO/"
git = "https://git.bioconductor.org/packages/topGO.git"
version('2.30.1', commit='b1469ce1d198ccb73ef79ca22cab81659e16dbaa')
version('2.28.0', commit='066a975d460046cce33fb27e74e6a0ebc33fd716')
depends_on('r@3.4.0:3.4.9')
depends_on('r-dbi', type=('build', 'run'))
depends_on('r-matrixstats', type=('build', 'run'))
depends_on('r-lattice', type=('build', 'run'))
depends_on('r-sparsem@0.73:', type=('build', 'run'))
depends_on('r-annotationdbi@1.7.19:', type=('build', 'run'))
depends_on('r-go-db@2.3.0:', type=('build', 'run'))
depends_on('r-biobase@2.0.0:', type=('build', 'run'))
depends_on('r-graph@1.14.0:', type=('build', 'run'))
depends_on('r-biocgenerics@0.13.6:', type=('build', 'run'))
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