var/spack/repos/builtin/packages/r-txdb-hsapiens-ucsc-hg19-knowngene/package.py


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22

# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RTxdbHsapiensUcscHg19Knowngene(RPackage):
    """Annotation package for TxDb object(s)

    Exposes an annotation databases generated from UCSC by exposing these as
    TxDb objects."""

    # This is a bioconductor package but there is no available git repo.
    homepage = "https://bioconductor.org/packages/release/data/annotation/html/TxDb.Hsapiens.UCSC.hg19.knownGene.html"
    url      = "https://bioconductor.org/packages/release/data/annotation/src/contrib/TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz"

    version('3.2.2', sha256='063de2b1174782a0b2b8ab7f04a0bdf3c43252cb67c685a9f8ef2b8e318352e9')

    depends_on('r-genomicfeatures@1.21.30:', type=('build', 'run'))
    depends_on('r-annotationdbi', type=('build', 'run'))