blob: 2ebf3b531cd02925a3f574079b813e712615db91 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
|
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RTximportdata(RPackage):
"""Import and summarize transcript-level estimates for transcript- and
gene-level analysis
Imports transcript-level abundance, estimated counts and transcript
lengths, and summarizes into matrices for use with downstream gene-level
analysis packages. Average transcript length, weighted by sample-specific
transcript abundance estimates, is provided as a matrix which can be used
as an offset for different expression of gene-level counts."""
homepage = "https://github.com/mikelove/tximport"
git = "https://git.bioconductor.org/packages/tximportData"
version('1.18.0', commit='24945f8dd1e4e441ad5145fb7a37a1630912f929')
|
