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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RWatermelon(RPackage):
"""Illumina 450 methylation array normalization and metrics.
15 flavours of betas and three performance metrics, with methods for
objects produced by methylumi and minfi packages."""
bioc = "wateRmelon"
version('2.0.0', commit='f6a331bdf50e0e5c94009fb67be873d996348ade')
version('1.34.0', commit='3fa2745535c22068a438747b41b9d793196098d4')
version('1.30.0', commit='66d7579fe49206d965832288df7937c3d43ed578')
depends_on('r@2.10:', type=('build', 'run'))
depends_on('r@3.5.0:', type=('build', 'run'), when='@2.0.0:')
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-limma', type=('build', 'run'))
depends_on('r-matrixstats', type=('build', 'run'))
depends_on('r-methylumi', type=('build', 'run'))
depends_on('r-lumi', type=('build', 'run'))
depends_on('r-roc', type=('build', 'run'))
depends_on('r-illuminahumanmethylation450kanno-ilmn12-hg19', type=('build', 'run'))
depends_on('r-illuminaio', type=('build', 'run'))
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