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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RYarn(RPackage):
"""Robust Multi-Condition RNA-Seq Preprocessing and Normalization.
Expedite large RNA-Seq analyses using a combination of previously
developed tools. YARN is meant to make it easier for the user in
performing basic mis-annotation quality control, filtering, and
condition-aware normalization. YARN leverages many Bioconductor tools
and statistical techniques to account for the large heterogeneity and
sparsity found in very large RNA-seq experiments."""
bioc = "yarn"
version('1.22.0', commit='0d94152eee4224bf1ca467fad7f2b35c2e1df6b2')
version('1.20.0', commit='b41e4ef14f980518af2fc59f202ad8ec148e8b47')
version('1.16.0', commit='ff5a18cb946ffec3cb773fe32af401c8a72d674a')
version('1.10.0', commit='36ffe84148eb871e93bc8f9e697475319b5ea472')
version('1.8.1', commit='ee0723d4dbf082b4469ca9c22cce4f1a2ac81c04')
version('1.6.0', commit='19d1b2ef275f294bd318b86e0d237c271880117d')
version('1.4.0', commit='36100f40b9e520c072d0d5ebf963723b813f7db0')
version('1.2.0', commit='28af616ef8c27dcadf6568e276dea8465486a697')
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-biomart', type=('build', 'run'))
depends_on('r-downloader', type=('build', 'run'))
depends_on('r-edger', type=('build', 'run'))
depends_on('r-gplots', type=('build', 'run'))
depends_on('r-limma', type=('build', 'run'))
depends_on('r-matrixstats', type=('build', 'run'))
depends_on('r-preprocesscore', type=('build', 'run'))
depends_on('r-readr', type=('build', 'run'))
depends_on('r-rcolorbrewer', type=('build', 'run'))
depends_on('r-quantro', type=('build', 'run'))
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