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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Relion(CMakePackage):
"""RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a
stand-alone computer program that employs an empirical Bayesian approach to
refinement of (multiple) 3D reconstructions or 2D class averages in
electron cryo-microscopy (cryo-EM)."""
homepage = "http://http://www2.mrc-lmb.cam.ac.uk/relion"
url = "https://github.com/3dem/relion"
version('develop', git='https://github.com/3dem/relion.git')
variant('gui', default=True, description="build the gui")
variant('cuda', default=False, description="enable compute on gpu")
variant('double', default=False, description="double precision (cpu) code")
variant('double-gpu', default=False, description="double precision (gpu) code")
variant('build_type', default='RelWithDebInfo',
description='The build type to build',
values=('Debug', 'Release', 'RelWithDebInfo',
'Profiling', 'Benchmarking'))
depends_on('mpi')
depends_on('fftw+float+double')
depends_on('fltk', when='+gui')
depends_on('cuda@8.0:8.99', when='+cuda')
def cmake_args(self):
args = [
'-DCMAKE_C_FLAGS=-g',
'-DCMAKE_CXX_FLAGS=-g',
'-DGUI=%s' % ('+gui' in self.spec),
'-DDoublePrec_CPU=%s' % ('+double' in self.spec),
'-DDoublePrec_GPU=%s' % ('+double-gpu' in self.spec),
]
if '+cuda' in self.spec:
args += [
'-DCUDA=on',
'-DCUFFT=on',
]
return args
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