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# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Revbayes(CMakePackage):
"""Bayesian phylogenetic inference using probabilistic graphical models
and an interpreted language."""
homepage = "https://revbayes.github.io"
url = "https://github.com/revbayes/revbayes/archive/v1.0.11.tar.gz"
git = "https://github.com/revbayes/revbayes.git"
version('develop', branch='development')
version('1.0.13', sha256='472b4ccc44d813c1ff1b8d27e8ccf3d96388de79aa1688b3714f683ba65038fa')
version('1.0.12', sha256='d79f3a9bc72305cab35009d11e1f027fcaacde7329a4c49b5b8285588a8d3588')
version('1.0.11', sha256='7e81b1952e3a63cb84617fa632f4ccdf246b4d79e7d537a423540de047dadf50')
version('1.0.10', sha256='95e9affe8ca8d62880cf46778b6ec9dd8726e62a185670ebcbadf2eb2bb79f93')
variant('mpi', default=True, description='Enable MPI parallel support')
depends_on('boost')
depends_on('mpi', when='+mpi')
conflicts('%gcc@7.1.0:', when='@:1.0.12')
@property
def root_cmakelists_dir(self):
if self.spec.version > Version('1.0.13') and '+mpi' in self.spec:
return 'projects/cmake/build-mpi'
else:
return 'projects/cmake/build'
@run_before('cmake')
def regenerate(self):
with working_dir(join_path('projects', 'cmake')):
mkdirp('build')
edit = FileFilter('regenerate.sh')
edit.filter('boost="true"', 'boost="false"')
if '+mpi' in self.spec:
edit.filter('mpi="false"', 'mpi="true"')
regenerate = Executable('./regenerate.sh')
regenerate()
def install(self, spec, prefix):
mkdirp(prefix.bin)
if '+mpi' in spec:
install_path = join_path(self.build_directory, '..', 'rb-mpi')
install(install_path, prefix.bin)
else:
install_path = join_path(self.build_directory, '..', 'rb')
install(install_path, prefix.bin)
@when('@1.0.12:1.0.13')
def install(self, spec, prefix):
mkdirp(prefix.bin)
install_path = join_path(self.build_directory, '..', 'rb')
install(install_path, prefix.bin)
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