1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
|
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import sys
from spack.operating_systems.mac_os import macos_version
from spack.package import *
#
# Need to add:
# KOKKOS support using an external (i.e. spack-supplied) kokkos library.
# Data Warehouse (FAODEL) enable/disable
class Seacas(CMakePackage):
"""The SEACAS Project contains the Exodus and IOSS I/O libraries
and a collection of applications which create, query, modify, or
translate Exodus databases. Exodus is a finite element mesh and
results database file format.
Default is to build the Exodus and IOSS libraries and the
io_shell, io_info, io_modify, struc_to_unstruc apps.
"""
homepage = "https://sandialabs.github.io/seacas/"
git = "https://github.com/sandialabs/seacas.git"
url = "https://github.com/sandialabs/seacas/archive/v2019-08-20.tar.gz"
maintainers = ["gsjaardema"]
# ###################### Versions ##########################
version("master", branch="master")
version(
"2022-10-14", sha256="cde91e7561d2352045d669a25bdf46a604d85ed1ea7f3f5028004455e4ce9d56"
)
version(
"2022-05-16", sha256="22ff67045d730a2c7d5394c9034e44a2033cc82a461574f93d899e9aa713d4ae"
)
version(
"2022-03-04", sha256="a934a473e1fdfbc8dbb55058358551a02e03a60e5cdbf2b28b8ecd3d9500bfa5"
)
version(
"2022-02-16", sha256="a6accb9924f0f357f63a01485c3eaaf5ceb6a22dfda73fc9bfb17d7e2f565098"
)
version(
"2022-01-27", sha256="beff12583814dcaf75cf8f1a78bb183c1dcc8937bc18d5206672e3a692db05e0"
)
version(
"2021-10-11", sha256="f8a6dac813c0937fed4a5377123aa61d47eb459ba87ddf368d02ebe10c2c3a0d"
)
version(
"2021-09-30", sha256="5d061e35e93eb81214da3b67ddda2829cf5efed38a566be6363a9866ba2f9ab3"
)
version(
"2021-05-12", sha256="92663767f0317018d6f6e422e8c687e49f6f7eb2b92e49e837eb7dc0ca0ac33d"
)
version(
"2021-04-05", sha256="76f66eec1fec7aba30092c94c7609495e6b90d9dcb6f35b3ee188304d02c6e04"
)
version(
"2021-01-20", sha256="7814e81981d03009b6816be3eb4ed3845fd02cc69e006ee008a2cbc85d508246"
)
version(
"2021-01-06", sha256="b233502a7dc3e5ab69466054cf358eb033e593b8679c6721bf630b03999bd7e5"
)
version(
"2020-08-13", sha256="e5eaf203eb2dbfb33c61ccde26deea459d058aaea79b0847e2f4bdb0cef1ddcb"
)
version(
"2020-05-12", sha256="7fc6915f60568b36e052ba07a77d691c99abe42eaba6ae8a6dc74bb33490ed60"
)
version(
"2020-03-16", sha256="2eb404f3dcb17c3e7eacf66978372830d40ef3722788207741fcd48417807af6"
)
version(
"2020-01-16", sha256="5ae84f61e410a4f3f19153737e0ac0493b144f20feb1bbfe2024f76613d8bff5"
)
version(
"2019-12-18", sha256="f82cfa276ebc5fe6054852383da16eba7a51c81e6640c73b5f01fc3109487c6f"
)
version(
"2019-10-14", sha256="ca4cf585cdbc15c25f302140fe1f61ee1a30d72921e032b9a854492b6c61fb91"
)
version(
"2019-08-20", sha256="a82c1910c2b37427616dc3716ca0b3c1c77410db6723aefb5bea9f47429666e5"
)
version(
"2019-07-26", sha256="651dac832b0cfee0f63527f563415c8a65b8e4d79242735c1e2aec606f6b2e17"
)
# ###################### Variants ##########################
# Package options
# The I/O libraries (exodus, IOSS) are always built
# -- required of both applications and legacy variants.
variant(
"applications",
default=True,
description='Build all "current" SEACAS applications. This'
" includes a debatable list of essential applications: "
"aprepro, conjoin, cpup, ejoin, epu, exo2mat, mat2exo, "
"exo_format, exodiff, explore, grepos, io_shell, io_info, "
"io_modify, nemslice, nemspread, zellij",
)
variant(
"legacy",
default=True,
description='Build all "legacy" SEACAS applications. This includes'
' a debatable list of "legacy" applications: algebra, blot, '
"exomatlab, exotxt, fastq, gen3d, genshell, gjoin, mapvar, "
"mapvar-kd, numbers, txtexo, nemesis",
)
# Build options
variant("fortran", default=True, description="Compile with Fortran support")
variant("shared", default=True, description="Enables the build of shared libraries")
variant("mpi", default=True, description="Enables MPI parallelism.")
variant(
"thread_safe", default=False, description="Enable thread-safe exodus and IOSS libraries"
)
# TPLs (alphabet order)
variant("adios2", default=False, description="Enable ADIOS2")
variant("cgns", default=True, description="Enable CGNS")
variant("faodel", default=False, description="Enable Faodel")
variant("matio", default=True, description="Compile with matio (MatLab) support")
variant("metis", default=False, description="Compile with METIS and ParMETIS")
variant("x11", default=True, description="Compile with X11")
# ###################### Dependencies ##########################
depends_on("netcdf-c@4.8.0:+mpi+parallel-netcdf", when="+mpi")
depends_on("netcdf-c@4.8.0:~mpi", when="~mpi")
depends_on("hdf5+hl~mpi", when="~mpi")
depends_on("cgns@4.2.0:+mpi+scoping", when="+cgns +mpi")
depends_on("cgns@4.2.0:~mpi+scoping", when="+cgns ~mpi")
depends_on("fmt@8.1.0:", when="@2022-03-04:2022-05-16")
depends_on("fmt@9.1.0:", when="@2022-10-14")
with when("+adios2"):
depends_on("adios2@master")
depends_on("adios2~mpi", when="~mpi")
depends_on("adios2+mpi", when="+mpi")
depends_on("matio", when="+matio")
with when("+metis"):
depends_on("metis+int64+real64")
depends_on("parmetis+int64", when="+mpi")
depends_on("libx11", when="+x11")
# The Faodel TPL is only supported in seacas@2021-04-05:
depends_on("faodel@1.2108.1:+mpi", when="+faodel +mpi")
depends_on("faodel@1.2108.1:~mpi", when="+faodel ~mpi")
conflicts(
"+faodel",
when="@:2021-01-20",
msg="The Faodel TPL is only compatible with @2021-04-05 and later.",
)
# MPI related dependencies
depends_on("mpi", when="+mpi")
depends_on("cmake@3.1:", type="build")
def setup_run_environment(self, env):
env.prepend_path("PYTHONPATH", self.prefix.lib)
def cmake_args(self):
spec = self.spec
from_variant = self.define_from_variant
define = self.define
if self.spec.satisfies("@2022-10-14:"):
project_name_base = "Seacas"
else:
project_name_base = "SEACASProj"
options = []
# #################### Base Settings #######################
options.extend(
[
from_variant("CMAKE_INSTALL_RPATH_USE_LINK_PATH", "shared"),
from_variant("BUILD_SHARED_LIBS", "shared"),
from_variant("SEACASExodus_ENABLE_THREADSAFE", "thread_safe"),
from_variant("SEACASIoss_ENABLE_THREADSAFE", "thread_safe"),
from_variant("TPL_ENABLE_X11", "x11"),
]
)
if "+mpi" in spec:
options.extend(
[
"-DCMAKE_C_COMPILER=%s" % spec["mpi"].mpicc,
"-DCMAKE_CXX_COMPILER=%s" % spec["mpi"].mpicxx,
"-DCMAKE_Fortran_COMPILER=%s" % spec["mpi"].mpifc,
define("TPL_ENABLE_MPI", True),
"-DMPI_BASE_DIR:PATH=%s" % spec["mpi"].prefix,
]
)
else:
options.extend(
[
define("TPL_ENABLE_MPI", False),
]
)
options.extend(
[
define(project_name_base + "_ENABLE_TESTS", True),
define(project_name_base + "_ENABLE_CXX11", True),
define(project_name_base + "_ENABLE_Kokkos", False),
define(project_name_base + "_HIDE_DEPRECATED_CODE", False),
from_variant(project_name_base + "_ENABLE_Fortran", "fortran"),
]
)
# ########## What applications should be built #############
# Check whether they want everything; if so, do the easy way...
if "+applications" in spec and "+legacy" in spec:
options.extend(
[
define(project_name_base + "_ENABLE_ALL_PACKAGES", True),
define(project_name_base + "_ENABLE_ALL_OPTIONAL_PACKAGES", True),
define(project_name_base + "_ENABLE_SECONDARY_TESTED_CODE", True),
]
)
else:
# Don't want everything; handle the subsets:
options.extend(
[
define(project_name_base + "_ENABLE_ALL_PACKAGES", False),
define(project_name_base + "_ENABLE_ALL_OPTIONAL_PACKAGES", False),
define(project_name_base + "_ENABLE_SECONDARY_TESTED_CODE", False),
define(project_name_base + "_ENABLE_SEACASIoss", True),
define(project_name_base + "_ENABLE_SEACASExodus", True),
from_variant(project_name_base + "_ENABLE_SEACASExodus_for", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASExoIIv2for32", "fortran"),
]
)
if "+applications" in spec:
options.extend(
[
define(project_name_base + "_ENABLE_SEACASAprepro", True),
define(project_name_base + "_ENABLE_SEACASAprepro_lib", True),
define(project_name_base + "_ENABLE_SEACASConjoin", True),
define(project_name_base + "_ENABLE_SEACASCpup", True),
define(project_name_base + "_ENABLE_SEACASEjoin", True),
define(project_name_base + "_ENABLE_SEACASEpu", True),
define(project_name_base + "_ENABLE_SEACASExo2mat", True),
define(project_name_base + "_ENABLE_SEACASExo_format", True),
define(project_name_base + "_ENABLE_SEACASExodiff", True),
from_variant(project_name_base + "_ENABLE_SEACASExplore", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASGrepos", "fortran"),
define(project_name_base + "_ENABLE_SEACASMat2exo", True),
define(project_name_base + "_ENABLE_SEACASNas2exo", True),
define(project_name_base + "_ENABLE_SEACASNemslice", True),
define(project_name_base + "_ENABLE_SEACASNemspread", True),
define(project_name_base + "_ENABLE_SEACASSlice", True),
define(project_name_base + "_ENABLE_SEACASZellij", True),
]
)
if "+legacy" in spec:
options.extend(
[
define(project_name_base + "_ENABLE_SEACASNemesis", True),
from_variant(project_name_base + "_ENABLE_SEACASAlgebra", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASBlot", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASEx1ex2v2", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASEx2ex1v2", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASExomatlab", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASExotec2", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASExotxt", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASFastq", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASGen3D", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASGenshell", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASGjoin", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASMapvar", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASMapvar-kd", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASNumbers", "fortran"),
from_variant(project_name_base + "_ENABLE_SEACASTxtexo", "fortran"),
]
)
# ##################### Dependencies ##########################
# Always need NetCDF-C
options.extend(
[
define("TPL_ENABLE_Netcdf", True),
"-DNetCDF_ROOT:PATH=%s" % spec["netcdf-c"].prefix,
]
)
if "+parmetis" in spec:
options.extend(
[
define("TPL_ENABLE_METIS", True),
"-DMETIS_LIBRARY_DIRS=%s" % spec["metis"].prefix.lib,
"-DMETIS_LIBRARY_NAMES=metis",
"-DTPL_METIS_INCLUDE_DIRS=%s" % spec["metis"].prefix.include,
define("TPL_ENABLE_ParMETIS", True),
"-DParMETIS_LIBRARY_DIRS=%s;%s"
% (spec["parmetis"].prefix.lib, spec["metis"].prefix.lib),
"-DParMETIS_LIBRARY_NAMES=parmetis;metis",
"-DTPL_ParMETIS_INCLUDE_DIRS=%s;%s"
% (spec["parmetis"].prefix.include, spec["metis"].prefix.include),
]
)
elif "+metis" in spec:
options.extend(
[
define("TPL_ENABLE_METIS", True),
"-DMETIS_LIBRARY_DIRS=%s" % spec["metis"].prefix.lib,
"-DMETIS_LIBRARY_NAMES=metis",
"-DTPL_METIS_INCLUDE_DIRS=%s" % spec["metis"].prefix.include,
define("TPL_ENABLE_ParMETIS", False),
]
)
else:
options.extend(
[
define("TPL_ENABLE_METIS", False),
define("TPL_ENABLE_ParMETIS", False),
]
)
if "+matio" in spec:
options.extend(
[
define("TPL_ENABLE_Matio", True),
"-DMatio_ROOT:PATH=%s" % spec["matio"].prefix,
]
)
else:
options.extend(
[
define("TPL_ENABLE_Matio", False),
]
)
if "+cgns" in spec:
options.extend(
[
define("TPL_ENABLE_CGNS", True),
"-DCGNS_ROOT:PATH=%s" % spec["cgns"].prefix,
]
)
else:
options.extend(
[
define("TPL_ENABLE_CGNS", False),
]
)
options.append(from_variant("TPL_ENABLE_Faodel", "faodel"))
for pkg in ("Faodel", "BOOST"):
if pkg.lower() in spec:
options.append(define(pkg + "_ROOT", spec[pkg.lower()].prefix))
if "+adios2" in spec:
options.extend(
[
define("TPL_ENABLE_ADIOS2", True),
"-DADIOS2_ROOT:PATH=%s" % spec["adios2"].prefix,
]
)
else:
options.extend(
[
define("TPL_ENABLE_ADIOS2", False),
]
)
# ################# RPath Handling ######################
if sys.platform == "darwin" and macos_version() >= Version("10.12"):
# use @rpath on Sierra due to limit of dynamic loader
options.append("-DCMAKE_MACOSX_RPATH:BOOL=ON")
else:
options.append("-DCMAKE_INSTALL_NAME_DIR:PATH=%s" % self.prefix.lib)
return options
|