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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Shoremap(MakefilePackage):
"""SHOREmap is a computational tool implementing a method that enables
simple and straightforward mapping-by-sequencing analysis.
Whole genome resequencing of pools of recombinant mutant genomes allows
directly linking phenotypic traits to causal mutations. Such an
analysis, called mapping-by-sequencing, combines classical genetic
mapping and next generation sequencing by relying on selection-induced
patterns within genome-wide allele frequency in pooled genomes."""
homepage = "http://bioinfo.mpipz.mpg.de/shoremap/"
url = "http://bioinfo.mpipz.mpg.de/shoremap/SHOREmap_v3.6.tar.gz"
version('3.6', 'ccc9331189705a139d50f2c161178cb1')
depends_on('dislin')
def edit(self, spec, prefix):
makefile = FileFilter('makefile')
makefile.filter(r'-L/usr/lib/',
self.spec['libxt'].libs.search_flags)
makefile.filter(r'-L\./dislin.* -ldislin_d',
self.spec['dislin:d'].libs.ld_flags)
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('SHOREmap', prefix.bin)
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