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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Smartdenovo(MakefilePackage):
"""SMARTdenovo is a de novo assembler for PacBio and Oxford Nanopore
(ONT) data."""
homepage = "https://github.com/ruanjue/smartdenovo"
git = "https://github.com/ruanjue/smartdenovo.git"
version('master', branch='master')
depends_on('sse2neon', when='target=aarch64:')
patch('aarch64.patch', sha256='7dd4bca28aafb0680cc1823aa58ac9000819993538e92628554666c4b3acc470', when='target=aarch64:')
patch('inline-limit.patch', sha256='9f514ed72c37cf52ee2ffbe06f9ca1ed5a3e0819dab5876ecd83107c5e5bed81')
def install(self, spec, prefix):
install_files = [
'pairaln', 'wtpre', 'wtcyc', 'wtmer', 'wtzmo', 'wtobt',
'wtclp', 'wtext', 'wtgbo', 'wtlay', 'wtcns', 'wtmsa'
]
mkdirp(prefix.bin)
for f in install_files:
install(f, prefix.bin)
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