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--- spack-src.org/CMakeLists.txt 2017-11-14 04:24:46.000000000 +0900
+++ spack-src/CMakeLists.txt 2019-10-08 09:10:10.409449275 +0900
@@ -29,8 +29,4 @@
set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}")
endif()
-
-add_subdirectory(lib/zlib-1.2.7)
-add_subdirectory(lib/bamtools-2.3.0)
-
add_subdirectory(src)
--- spack-src.org/src/CMakeLists.txt 2017-11-14 04:24:46.000000000 +0900
+++ spack-src/src/CMakeLists.txt 2019-10-08 09:21:52.569644934 +0900
@@ -1,7 +1,6 @@
cmake_minimum_required(VERSION 2.8)
project(Sniffles)
-include_directories (../lib/bamtools-2.3.0/src)
include_directories(../lib/tclap-1.2.1/include)
configure_file( Version.h.in ${CMAKE_SOURCE_DIR}/src/Version.h )
@@ -32,8 +31,8 @@
)
#target_link_libraries(ngm-core pthread)
-TARGET_LINK_LIBRARIES(sniffles BamTools-static)
-TARGET_LINK_LIBRARIES(sniffles zlibstatic)
+TARGET_LINK_LIBRARIES(sniffles bamtools)
+TARGET_LINK_LIBRARIES(sniffles z)
add_executable(sniffles-debug
tree/Breakpoint_Tree.cpp
@@ -63,6 +62,6 @@
SET_TARGET_PROPERTIES(sniffles-debug PROPERTIES COMPILE_FLAGS "-g3 -O0")
#target_link_libraries(sniffles-debug pthread)
-TARGET_LINK_LIBRARIES(sniffles-debug BamTools-static)
-TARGET_LINK_LIBRARIES(sniffles-debug zlibstatic)
+TARGET_LINK_LIBRARIES(sniffles-debug bamtools)
+TARGET_LINK_LIBRARIES(sniffles-debug z)
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