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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Soapdenovo2(MakefilePackage):
"""SOAPdenovo is a novel short-read assembly method that can build a de
novo draft assembly for the human-sized genomes. The program is
specially designed to assemble Illumina GA short reads. It creates
new opportunities for building reference sequences and carrying out
accurate analyses of unexplored genomes in a cost effective way."""
homepage = "https://github.com/aquaskyline/SOAPdenovo2"
url = "https://github.com/aquaskyline/SOAPdenovo2/archive/r240.tar.gz"
version('240', '3bc6b63edf87bb47874bb6f126e43cd4')
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('SOAPdenovo-63mer', prefix.bin)
install('SOAPdenovo-127mer', prefix.bin)
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