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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Sparta(Package):
"""small RNA-PARE Target Analyzer (sPARTA) is a tool which utilizes
high-throughput sequencing to profile genome-wide cleavage
products."""
homepage = "https://github.com/atulkakrana/sPARTA.github"
url = "https://github.com/atulkakrana/sPARTA/archive/1.25.tar.gz"
version('1.25', sha256='007997b9bf5041ae35c9bb79455d533c0f0773f9dd3ba4e5ddf306139625681f')
depends_on('bowtie2')
depends_on('python@3:', type=('build', 'run'))
depends_on('py-scipy', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('sPARTA.py', prefix.bin)
install('revFernoMap.py', prefix.bin)
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