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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class SraToolkit(Package):
"""The NCBI SRA Toolkit enables reading ("dumping") of sequencing files
from the SRA database and writing ("loading") files into the .sra
format."""
homepage = "https://trace.ncbi.nlm.nih.gov/Traces/sra"
url = "https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.8.2-1/sratoolkit.2.8.2-1-centos_linux64.tar.gz"
version('2.9.2', sha256='17dbe13aa1ed7955d31e1e76e8b62786e80a77e9ed9d396631162dc3ad8b716d')
version('2.8.2-1', sha256='b053061aae7c6d00162fe0f514be4128a60365b4b2b5b36e7f4798b348b55cf5')
def url_for_version(self, version):
url = 'https://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/{0}/sratoolkit.{0}-centos_linux64.tar.gz'
return url.format(version)
def install(self, spec, prefix):
install_tree('bin', prefix.bin, symlinks=True)
install_tree('example', prefix.example)
install_tree('schema', prefix.schema)
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